Module 3.4 – Walking through Nextstrain trees

What to know

This module demonstrates how to navigate through Nextstrain phylogenetic trees using various functionalities such as filtering, zooming, coloring and labeling to further analyze SARS-CoV-2 genomic epidemiological data.

thumbnail for module 3.4

Overview

Presenter: Krisandra Allen, MPH, MB(ASCP)CM | Molecular Epidemiologist Washington State Department of Health
Download Presentation Slides [PDF - 19 slides]

Nextstrain provides a list of and publicly available analyses to help explore their tool.

Further Reading

  1. Nextstrain, updated 2021.

Additional Resources

  1. Nextstrain, updated 2020.
  2. Updated 2021.

Hands-on Example

  2. Note: Please first convert ToolkitModule_3.4-demoData.csv into a tsv file, according to the instructions
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Content Source:
National Center for Emerging and Zoonotic Infectious Diseases (NCEZID)